Eukaryotic Algae
All other algae are eukaryotes and conduct photosynthesis within membrane-bound structures called chloroplasts. These chloroplasts contain DNA and are similar in structure to cyanobacteria, presumably representing reduced cyanobacterial endosymbionts. The exact nature of the chloroplasts is different among the different lines of algae, possibly reflecting different endosymbiotic events. There are three groups that have primary chloroplasts:
In these groups the chloroplast is surrounded by two membranes, of which the outer comes from the "host" and the inner from the chloroplast. The chloroplasts of red algae have a more or less typical cyanobacterial pigmentation, while the green algae and higher plants have chloroplasts with chlorophyll a and b, the latter found in some cyanobacteria but not most. It is still not entirely clear whether these groups acquired chloroplasts independently (i.e., different endosymbiotic events), or diverged later from a single ancestral form (i.e., a single endosymbiotic event).
Two other groups have green chloroplasts containing chlorophyll b, the euglenids and chlorarachniophytes. These are surrounded by three and four membranes, respectively, and were probably retained from an ingested green alga. Those of the chlorarchniophytes contain a small nucleomorph, which is the remnant of the alga's nucleus. It has been suggested that the euglenid chloroplasts only have three membranes because they were acquired through myzocytosis rather than phagocytosis.
The remaining algae all have chloroplasts containing chlorophylls a and c. The latter chlorophyll type is not known from any prokaryotes or primary chloroplasts, but genetic similarities with the red algae suggest a relationship there. These groups include:
In the first three of these groups the chloroplast has four membranes, retaining a nucleomorph in cryptomonads. It has been suggested that these groups, sometimes referred to as the Chromista, also share a common origin but this is far from certain. The typical dinoflagellate chloroplast has three membranes, but there is considerable diversity in chloroplasts among the group, some members presumably having acquired theirs from other sources. The